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When using an in-house analytical procedure, i.e. a non-pharmacopoeial analytical procedure, general chapter 2.2.46 is not mandatory. See also: FAQ 

Any reference to and/or application Implementation of general chapter chapter 2.2.46 for in-house procedures for quality control of substances or medicinal products using chromatographic procedures not described in relevant Ph. Eur. monographs is subject to approval by the competent authority as part of the assessment of a marketing authorisation application.